Publications

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• Vats K, Benoit DS (2013 May 2). Dynamic Manipulation of Hydrogels to Control Cell Behavior: A Review. - Tissue engineering. Part B, Reviews. .
• Schiavenato M, Antos SA, Bell FA, Freedman BR, Kozak AJ, Kroot TB, Lam EH, Ross KE, Sternfield BA, Carney LH (2013 May 10). Development of a scale for estimating procedural distress in the newborn intensive care unit: The Procedural Load Index. - Early human development. .
• Chen T, Hilton MJ, Brown EB, Zuscik MJ, Awad HA (2013 May). Engineering superficial zone features in tissue engineered cartilage. - Biotechnology and bioengineering. .
• Carney LH, Mao J, Koch KJ, Doherty KA (2013 May). Modeling detection of 500-hertz tones in reproducible noise for listeners with sensorineural hearing loss. - The Journal of the Acoustical Society of America. .
• Carney LH, Li J, Li T, McDonough JM (2013 May). Using a computational model for the auditory midbrain to explore the neural representation of vowels. - The Journal of the Acoustical Society of America. .
• Chu JY, Chen T, Awad HA, Elfar J, Hammert WC (2013 Apr 9). Comparison of an All-Inside Suture Technique With Traditional Pull-Out Suture and Suture Anchor Repair Techniques for Flexor Digitorum Profundus Attachment to Bone. - The Journal of hand surgery. .
• Hoffman MD, Benoit DS (2013 Apr 1). Agonism of Wnt-β-catenin signalling promotes mesenchymal stem cell (MSC) expansion. - Journal of tissue engineering and regenerative medicine. .
• Elegbe EC, McAleavey SA (2013 Apr). Single tracking location methods suppress speckle noise in shear wave velocity estimation. - Ultrasonic imaging. .
• Waugh RE, Huang YS, Arif BJ, Bauserman R, Palis J (2013 Apr). Development of membrane mechanical function during terminal stages of primitive erythropoiesis in mice. - Experimental hematology. .
• Arany S, Benoit DS, Dewhurst S, Ovitt CE (2013 Mar 19). Nanoparticle-mediated Gene Silencing Confers Radioprotection to Salivary Glands In Vivo. - Molecular therapy : the journal of the American Society of Gene Therapy. .
• Dhillon RS, Xie C, Tyler W, Calvi LM, Awad HA, Zuscik MJ, O'Keefe RJ, Schwarz EM (2013 Mar). PTH-enhanced structural allograft healing is associated with decreased angiopoietin-2-mediated arteriogenesis, mast cell accumulation, and fibrosis. - Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research. .
• Hoffman MD, Benoit DS (2013 Mar). Emerging ideas: Engineering the periosteum: revitalizing allografts by mimicking autograft healing. - Clinical orthopaedics and related research. .
• Burke K, Tang P, Brown E (2013 Mar). Second harmonic generation reveals matrix alterations during breast tumor progression. - Journal of biomedical optics. .
• Madden KS, Zettel ML, Majewska AK, Brown EB (2013 Mar). Brain tumor imaging: imaging brain metastasis using a brain-metastasizing breast adenocarcinoma. - Cold Spring Harbor protocols. .
• Madden KS, Zettel ML, Majewska AK, Brown EB (2013 Mar). Brain tumor imaging: live imaging of glioma by two-photon microscopy. - Cold Spring Harbor protocols. .
• Burke K, Tang P, Brown E (2013 Mar). Second harmonic generation reveals matrix alterations during breast tumor progression. - Journal of biomedical optics. .
• Madden KS, Szpunar MJ, Brown EB (2013 Mar). Early impact of social isolation and breast tumor progression in mice. - Brain, behavior, and immunity. .
• Inzana JA, Maher JR, Takahata M, Schwarz EM, Berger AJ, Awad HA (2013 Feb 22). Bone fragility beyond strength and mineral density: Raman spectroscopy predicts femoral fracture toughness in a murine model of rheumatoid arthritis. - Journal of biomechanics. .
• Luan H, Gdowski MJ, Newlands SD, Gdowski GT (2013 Jan 16). Convergence of vestibular and neck proprioceptive sensory signals in the cerebellar interpositus. - The Journal of neuroscience : the official journal of the Society for Neuroscience. .
• Busch DR, Choe R, Rosen MA, Guo W, Durduran T, Feldman MD, Mies C, Czerniecki BJ, Tchou J, Demichele A, Schnall MD, Yodh AG (2013 Jan 1). Optical malignancy parameters for monitoring progression of breast cancer neoadjuvant chemotherapy. - Biomedical optics express. .
• Dunkman AA, Buckley MR, Mienaltowski MJ, Adams SM, Thomas SJ, Satchell L, Kumar A, Pathmanathan L, Beason DP, Iozzo RV, Birk DE, Soslowsky LJ (2013 Jan). Decorin expression is important for age-related changes in tendon structure and mechanical properties. - Matrix biology : journal of the International Society for Matrix Biology. .
• Juneja SC, Schwarz EM, O'Keefe RJ, Awad HA (2013). Cellular and molecular factors in flexor tendon repair and adhesions: a histological and gene expression analysis. - Connective tissue research. .
• Thyagarajan S, Madden KS, Boehm GW, Stevens SY, Felten DL, Bellinger DL (2013). L-Deprenyl reverses age-associated decline in splenic norepinephrine, interleukin-2 and interferon-γ production in old female F344 rats. - Neuroimmunomodulation. .
• Marsh G, Waugh RE (2013). Quantifying the mechanical properties of the endothelial glycocalyx with atomic force microscopy. - Journal of visualized experiments : JoVE. .
• Benoit DS, Boutin ME (2012 Nov 12). Controlling mesenchymal stem cell gene expression using polymer-mediated delivery of siRNA. - Biomacromolecules. .
• Takahata M, Maher JR, Juneja SC, Inzana J, Xing L, Schwarz EM, Berger AJ, Awad HA (2012 Nov). Mechanisms of bone fragility in a mouse model of glucocorticoid-treated rheumatoid arthritis: implications for insufficiency fracture risk. - Arthritis and rheumatism. .
• Huber MB, Bunte K, Nagarajan MB, Biehl M, Ray LA, Wismüller A (2012 Oct). Texture feature ranking with relevance learning to classify interstitial lung disease patterns. - Artificial intelligence in medicine. .
• Hyun YM, Sumagin R, Sarangi PP, Lomakina E, Overstreet MG, Baker CM, Fowell DJ, Waugh RE, Sarelius IH, Kim M (2012 Jul 2). Uropod elongation is a common final step in leukocyte extravasation through inflamed vessels. - The Journal of experimental medicine. .
• Choe R, Durduran T (2012 Jul). Diffuse Optical Monitoring of the Neoadjuvant Breast Cancer Therapy. - IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society. .
• Baker CM, Comrie WA, Hyun YM, Chung HL, Fedorchuk CA, Lim K, Brakebusch C, McGrath JL, Waugh RE, Meier-Schellersheim M, Kim M (2012 Jun 26). Opposing roles for RhoH GTPase during T-cell migration and activation. - Proceedings of the National Academy of Sciences of the United States of America. .
• Chandler EM, Seo BR, Califano JP, Andresen Eguiluz RC, Lee JS, Yoon CJ, Tims DT, Wang JX, Cheng L, Mohanan S, Buckley MR, Cohen I, Nikitin AY, Williams RM, Gourdon D, Reinhart-King CA, Fischbach C (2012 Jun 19). Implanted adipose progenitor cells as physicochemical regulators of breast cancer. - Proceedings of the National Academy of Sciences of the United States of America. .
• Arany S, Xu Q, Hernady E, Benoit DS, Dewhurst S, Ovitt CE (2012 Jun). Pro-apoptotic gene knockdown mediated by nanocomplexed siRNA reduces radiation damage in primary salivary gland cultures. - Journal of cellular biochemistry. .
• Chen T, Buckley M, Cohen I, Bonassar L, Awad HA (2012 May). Insights into interstitial flow, shear stress, and mass transport effects on ECM heterogeneity in bioreactor-cultivated engineered cartilage hydrogels. - Biomechanics and modeling in mechanobiology. .
• Lapek JD, McGrath JL, Ricke WA, Friedman AE (2012 Apr 15). LC/LC-MS/MS of an innovative prostate human epithelial cancer (PHEC) in vitro model system. - Journal of chromatography. B, Analytical technologies in the biomedical and life sciences. .
• Kavalenka MN, Striemer CC, Fang DZ, Gaborski TR, McGrath JL, Fauchet PM (2012 Apr 13). Ballistic and non-ballistic gas flow through ultrathin nanopores. - Nanotechnology. .
• Perry SW, Burke RM, Brown EB (2012 Feb). Two-photon and second harmonic microscopy in clinical and translational cancer research. - Annals of biomedical engineering. .
• Takahata M, Schwarz EM, Chen T, O'Keefe RJ, Awad HA (2012 Jan). Delayed short-course treatment with teriparatide (PTH(1-34)) improves femoral allograft healing by enhancing intramembranous bone formation at the graft-host junction. - Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research. .
• Farhat YM, Al-Maliki AA, Chen T, Juneja SC, Schwarz EM, O'Keefe RJ, Awad HA (2012). Gene expression analysis of the pleiotropic effects of TGF-β1 in an in vitro model of flexor tendon healing. - PloS one. .
• Loiselle AE, Frisch BJ, Wolenski M, Jacobson JA, Calvi LM, Schwarz EM, Awad HA, O'Keefe RJ (2012). Bone marrow-derived matrix metalloproteinase-9 is associated with fibrous adhesion formation after murine flexor tendon injury. - PloS one. .
• Voleti PB, Buckley MR, Soslowsky LJ (2012). Tendon healing: repair and regeneration. - Annual review of biomedical engineering. .
• Schwarz DM, Zilany MS, Skevington M, Huang NJ, Flynn BC, Carney LH (2012). Semi-supervised spike sorting using pattern matching and a scaled Mahalanobis distance metric. - Journal of neuroscience methods. .
• McAleavey S (2012). Source effects in SWIPE: shear-wave-assisted ultrasound imaging. - Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference. .
• Nam JH, Fettiplace R (2012). Optimal electrical properties of outer hair cells ensure cochlear amplification. - PloS one. .
• Bouta EM, Wood RW, Perry SW, Brown EB, Ritchlin CT, Xing L, Schwarz EM (2011 Dec). Measuring intranodal pressure and lymph viscosity to elucidate mechanisms of arthritic flare and therapeutic outcomes. - Annals of the New York Academy of Sciences. .
• Mesquita RC, Durduran T, Yu G, Buckley EM, Kim MN, Zhou C, Choe R, Sunar U, Yodh AG (2011 Nov 28). Direct measurement of tissue blood flow and metabolism with diffuse optics. - Philosophical transactions. Series A, Mathematical, physical, and engineering sciences. .
• Carstensen E, Gracewski SM, Dalecki D (2011 Nov). Shear strain from irrotational tissue displacements near bubbles. - The Journal of the Acoustical Society of America. .
• Jang NW, Zakrzewski A, Rossi C, Dalecki D, Gracewski S (2011 Nov). Natural frequencies of two bubbles in a compliant tube: analytical, simulation, and experimental results. - The Journal of the Acoustical Society of America. .
• Garvin KA, Dalecki D, Hocking DC (2011 Nov). Vascularization of three-dimensional collagen hydrogels using ultrasound standing wave fields. - Ultrasound in medicine & biology. .
• Sampson ER, Hilton MJ, Tian Y, Chen D, Schwarz EM, Mooney RA, Bukata SV, O'Keefe RJ, Awad H, Puzas JE, Rosier RN, Zuscik MJ (2011 Sep 21). Teriparatide as a chondroregenerative therapy for injury-induced osteoarthritis. - Science translational medicine. .
• Fitzpatrick CK, Baldwin MA, Laz PJ, FitzPatrick DP, Lerner AL, Rullkoetter PJ (2011 Sep 2). Development of a statistical shape model of the patellofemoral joint for investigating relationships between shape and function. - Journal of biomechanics. .
• Domm W, Brooks L, Chung HL, Feng C, Bowers WJ, Watson G, McGrath JL, Dewhurst S (2011 Sep 16). Robust antigen-specific humoral immune responses to sublingually delivered adenoviral vectors encoding HIV-1 Env: association with mucoadhesion and efficient penetration of the sublingual barrier. - Vaccine. .
• Gregoire S, Xiao J, Silva BB, Gonzalez I, Agidi PS, Klein MI, Ambatipudi KS, Rosalen PL, Bauserman R, Waugh RE, Koo H (2011 Sep). Role of glucosyltransferase B in interactions of Candida albicans with Streptococcus mutans and with an experimental pellicle on hydroxyapatite surfaces. - Applied and environmental microbiology. .
• Barker G, McGrath JL, Klapars A, Stead D, Zhou G, Campos KR, O'Brien P (2011 Aug 5). Enantioselective, palladium-catalyzed α-arylation of N-Boc pyrrolidine: in situ react IR spectroscopic monitoring, scope, and synthetic applications. - The Journal of organic chemistry. .
• Benoit DS, Srinivasan S, Shubin AD, Stayton PS (2011 Jul 11). Synthesis of folate-functionalized RAFT polymers for targeted siRNA delivery. - Biomacromolecules. .
• Elegbe EC, Menon MG, McAleavey SA (2011 Jul). Comparison of two methods for the generation of spatially modulated ultrasound radiation force. - IEEE transactions on ultrasonics, ferroelectrics, and frequency control. .
• Sullivan KD, Brown EB (2011 May). Multiphoton fluorescence recovery after photobleaching in bounded systems. - Physical review. E, Statistical, nonlinear, and soft matter physics. .
• Huber MB, Nagarajan MB, Leinsinger G, Eibel R, Ray LA, Wismüller A (2011 Apr). Performance of topological texture features to classify fibrotic interstitial lung disease patterns. - Medical physics. .
• Brison J, Benoit DS, Muramoto S, Robinson M, Stayton PS, Castner DG (2011 Jan). ToF-SIMS imaging and depth profiling of HeLa cells treated with bromodeoxyuridine. - Surface and interface analysis : SIA. .
• Bogart LJ, Levy AD, Gladstone M, Allen PD, Zettel M, Ison JR, Luebke AE, Majewska AK (2011). Loss of prestin does not alter the development of auditory cortical dendritic spines. - Neural plasticity. .